Amazon Seller GST/HST in Canada
How GST/HST really works for Canadian Amazon sellers: when you must register, why Amazon-collected tax must never be double-reported on your return, claiming input tax credits on FBA fees and ads, provincial PST and QST, and the rules for non-resident sellers. Written by a licensed Canadian CPA who works with FBA and FBM sellers.
Canadian Amazon sellers generally must register for GST/HST once their taxable sales reach $30,000 in a rolling four-quarter period, and the single biggest mistake is double-reporting tax that Amazon already collected and remitted on your behalf. Amazon collects and remits GST/HST on many marketplace sales to Canadian buyers, so that tax must never appear again on your own return. You still report your self-collected sales, claim input tax credits on FBA fees, advertising and other Canadian business costs, and watch for provincial PST and QST obligations based on where you sell and store inventory.
When Does an Amazon Seller Have to Register for GST/HST?
The general rule is the $30,000 small-supplier threshold. Once your taxable sales reach $30,000 over any rolling four consecutive calendar quarters, you are no longer a small supplier and must register for, charge and remit GST/HST. Many Amazon sellers cross this line faster than they expect once a product takes off, and registration is not automatic; it is your responsibility to track it and register on time.
There is also a strong case for registering voluntarily before you hit the threshold. Registering early lets you claim input tax credits on your startup and pre-launch costs, inventory, software, advertising and Amazon fees, which you otherwise lose. Sellers who manage their books well from day one, the approach we take across our Amazon seller accounting and tax services, often register voluntarily for exactly this reason.
Why register early: If you wait until after you pass $30,000, you generally lose the input tax credits on everything you bought before registering. For an FBA seller with significant startup inventory and ad spend, those lost credits can be substantial.
The Number One Amazon GST/HST Mistake: Double-Reporting
This is the error that puts more Amazon sellers offside than any other. Amazon collects and remits GST/HST on many marketplace sales to Canadian buyers directly to the CRA. When Amazon has already collected and remitted that tax, it must not appear again on your GST/HST return as tax you collected. If you include it, you effectively remit the same tax twice, once through Amazon and once through your own filing.
The fix is to reconcile your Amazon settlement reports and cleanly separate marketplace-collected tax from the tax you collected yourself, on every single return. This separation is the heart of getting an Amazon seller's GST/HST right, and it is a core part of how we handle e-commerce accounting and tax for multi-channel sellers.
The trap: A seller who reports gross Amazon sales and the tax Amazon already remitted, without separating it out, can overpay the CRA significantly. This is the single most common multi-channel filing error, and it is fully avoidable with proper settlement reconciliation.
Claiming Input Tax Credits on FBA Fees and Ads
Registration is not only an obligation; it is also where the money comes back. As a registrant, you claim input tax credits for the GST/HST you pay on your Canadian business expenses, which offsets the tax you collect. For Amazon sellers, the recoverable amounts add up quickly:
| Expense | ITC Available? |
|---|---|
| FBA fulfilment and referral fees (where GST/HST charged) | Yes, recoverable |
| Amazon storage and advertising fees | Yes, recoverable |
| Advertising on Google and Meta (GST/HST-registered) | Yes, recoverable |
| Software, apps and subscriptions | Yes, recoverable |
| Professional fees and Canadian business costs | Yes, recoverable |
| Inventory purchased in Canada with GST/HST | Yes, recoverable |
Capturing every eligible credit is the difference between a clean filing and money left on the table. Sellers with significant international sales, which are zero-rated, often find themselves in a refund position because they collect little tax but pay it on all these Canadian costs.
International Sales Are Zero-Rated
If you sell to customers outside Canada, those sales are generally zero-rated. You charge 0% GST/HST on them, yet you still claim full input tax credits on your Canadian business expenses. This is why Amazon sellers with heavy US or international volume are frequently in a net GST/HST refund position every period: little tax collected, full credits claimed. Structuring filings to recognize this is one of the advantages of working with an accountant who understands cross-border Amazon FBA and Shopify seller tax.
Provincial PST and QST: The Layer Sellers Forget
GST/HST is federal, but several provinces run their own sales taxes that Amazon's collection may not fully cover for your situation. These have their own thresholds and registration rules and are easy to miss:
| Province | Tax | What to Watch |
|---|---|---|
| British Columbia | PST | Registration can be required once sales into BC exceed the provincial threshold |
| Quebec | QST | Registration may be required for sellers making taxable supplies in Quebec |
| Saskatchewan | PST | Has its own registration requirements for out-of-province sellers |
| Manitoba | RST | Similar provincial registration considerations apply |
Practical point: Whether you must register provincially depends on where you sell, where your inventory sits and your volume into each province. We assess these obligations rather than leaving them to chance, because the provinces enforce them separately from the CRA.
Non-Resident Amazon Sellers Selling Into Canada
If you live outside Canada but sell to Canadian customers through Amazon, you can still have Canadian GST/HST obligations. Whether you must register depends on your revenue, whether your inventory is stored in Canada, and how Amazon treats the tax on your sales. Non-resident sellers storing inventory in Canadian fulfilment centres in particular need to look closely at their registration and remittance position. This is a frequent question we handle for sellers entering the Canadian market.
A Simple Worked Example
Consider a registered FBA seller in a quarter:
| Item | Amount |
|---|---|
| GST/HST Amazon collected and remitted on marketplace sales | Reported by Amazon, NOT on your return |
| GST/HST you collected on your own direct sales | $2,000 |
| ITCs on FBA fees, ads, software and Canadian costs | $2,600 |
| Net result on the return | $600 refund |
Because Amazon handled the tax on its marketplace sales and the seller's recoverable credits exceeded the small amount of self-collected tax, the period ends in a refund. A seller who mistakenly added Amazon's collected tax to the return would have turned that refund into a needless payment.
Where Amazon GST/HST goes wrong: Registering late and losing ITCs, double-reporting Amazon-collected tax, missing ITCs on FBA fees and ads, ignoring provincial PST and QST, and non-residents assuming they have no Canadian obligations. Every one of these is avoidable with Amazon-specific accounting.
Case Study: FBA Seller Double-Reporting Tax, Ontario
An Ontario FBA seller had been adding the GST/HST Amazon already remitted to their own returns and was paying the CRA far more than they owed, while never claiming the input tax credits on their FBA fees and ad spend. We reconciled the Amazon settlement reports, separated marketplace-collected from self-collected tax, claimed the missed credits across the open periods, and corrected the filings. The seller moved from overpaying every quarter to a properly calculated position, with several periods turning into refunds once the credits were applied.
Filing Amazon GST/HST Right Starts With the Settlement Report.
We reconcile your Amazon payouts, separate marketplace-collected tax, claim every credit and file correctly. From $150 per filing. All fees include HST.
Book Free ConsultationFrequently Asked Questions: Amazon Seller GST/HST in Canada
What Our Clients Say
1300+ five-star reviews from business owners across Ontario and Canada.
File Your Amazon GST/HST Right. From $150.
We reconcile your Amazon settlements, separate marketplace-collected tax, claim every input tax credit, handle provincial and non-resident obligations, and file your GST/HST correctly. AFFORDABLE flat fees. All fees include HST.
