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Amazon Seller Tax Guide · Canada · Licensed CPA

Amazon Seller GST/HST in Canada

How GST/HST really works for Canadian Amazon sellers: when you must register, why Amazon-collected tax must never be double-reported on your return, claiming input tax credits on FBA fees and ads, provincial PST and QST, and the rules for non-resident sellers. Written by a licensed Canadian CPA who works with FBA and FBM sellers.

Canadian Amazon sellers generally must register for GST/HST once their taxable sales reach $30,000 in a rolling four-quarter period, and the single biggest mistake is double-reporting tax that Amazon already collected and remitted on your behalf. Amazon collects and remits GST/HST on many marketplace sales to Canadian buyers, so that tax must never appear again on your own return. You still report your self-collected sales, claim input tax credits on FBA fees, advertising and other Canadian business costs, and watch for provincial PST and QST obligations based on where you sell and store inventory.

When Does an Amazon Seller Have to Register for GST/HST?

The general rule is the $30,000 small-supplier threshold. Once your taxable sales reach $30,000 over any rolling four consecutive calendar quarters, you are no longer a small supplier and must register for, charge and remit GST/HST. Many Amazon sellers cross this line faster than they expect once a product takes off, and registration is not automatic; it is your responsibility to track it and register on time.

There is also a strong case for registering voluntarily before you hit the threshold. Registering early lets you claim input tax credits on your startup and pre-launch costs, inventory, software, advertising and Amazon fees, which you otherwise lose. Sellers who manage their books well from day one, the approach we take across our Amazon seller accounting and tax services, often register voluntarily for exactly this reason.

Why register early: If you wait until after you pass $30,000, you generally lose the input tax credits on everything you bought before registering. For an FBA seller with significant startup inventory and ad spend, those lost credits can be substantial.

The Number One Amazon GST/HST Mistake: Double-Reporting

This is the error that puts more Amazon sellers offside than any other. Amazon collects and remits GST/HST on many marketplace sales to Canadian buyers directly to the CRA. When Amazon has already collected and remitted that tax, it must not appear again on your GST/HST return as tax you collected. If you include it, you effectively remit the same tax twice, once through Amazon and once through your own filing.

The fix is to reconcile your Amazon settlement reports and cleanly separate marketplace-collected tax from the tax you collected yourself, on every single return. This separation is the heart of getting an Amazon seller's GST/HST right, and it is a core part of how we handle e-commerce accounting and tax for multi-channel sellers.

The trap: A seller who reports gross Amazon sales and the tax Amazon already remitted, without separating it out, can overpay the CRA significantly. This is the single most common multi-channel filing error, and it is fully avoidable with proper settlement reconciliation.

Claiming Input Tax Credits on FBA Fees and Ads

Registration is not only an obligation; it is also where the money comes back. As a registrant, you claim input tax credits for the GST/HST you pay on your Canadian business expenses, which offsets the tax you collect. For Amazon sellers, the recoverable amounts add up quickly:

ExpenseITC Available?
FBA fulfilment and referral fees (where GST/HST charged)Yes, recoverable
Amazon storage and advertising feesYes, recoverable
Advertising on Google and Meta (GST/HST-registered)Yes, recoverable
Software, apps and subscriptionsYes, recoverable
Professional fees and Canadian business costsYes, recoverable
Inventory purchased in Canada with GST/HSTYes, recoverable

Capturing every eligible credit is the difference between a clean filing and money left on the table. Sellers with significant international sales, which are zero-rated, often find themselves in a refund position because they collect little tax but pay it on all these Canadian costs.

International Sales Are Zero-Rated

If you sell to customers outside Canada, those sales are generally zero-rated. You charge 0% GST/HST on them, yet you still claim full input tax credits on your Canadian business expenses. This is why Amazon sellers with heavy US or international volume are frequently in a net GST/HST refund position every period: little tax collected, full credits claimed. Structuring filings to recognize this is one of the advantages of working with an accountant who understands cross-border Amazon FBA and Shopify seller tax.

Provincial PST and QST: The Layer Sellers Forget

GST/HST is federal, but several provinces run their own sales taxes that Amazon's collection may not fully cover for your situation. These have their own thresholds and registration rules and are easy to miss:

ProvinceTaxWhat to Watch
British ColumbiaPSTRegistration can be required once sales into BC exceed the provincial threshold
QuebecQSTRegistration may be required for sellers making taxable supplies in Quebec
SaskatchewanPSTHas its own registration requirements for out-of-province sellers
ManitobaRSTSimilar provincial registration considerations apply

Practical point: Whether you must register provincially depends on where you sell, where your inventory sits and your volume into each province. We assess these obligations rather than leaving them to chance, because the provinces enforce them separately from the CRA.

Non-Resident Amazon Sellers Selling Into Canada

If you live outside Canada but sell to Canadian customers through Amazon, you can still have Canadian GST/HST obligations. Whether you must register depends on your revenue, whether your inventory is stored in Canada, and how Amazon treats the tax on your sales. Non-resident sellers storing inventory in Canadian fulfilment centres in particular need to look closely at their registration and remittance position. This is a frequent question we handle for sellers entering the Canadian market.

A Simple Worked Example

Consider a registered FBA seller in a quarter:

ItemAmount
GST/HST Amazon collected and remitted on marketplace salesReported by Amazon, NOT on your return
GST/HST you collected on your own direct sales$2,000
ITCs on FBA fees, ads, software and Canadian costs$2,600
Net result on the return$600 refund

Because Amazon handled the tax on its marketplace sales and the seller's recoverable credits exceeded the small amount of self-collected tax, the period ends in a refund. A seller who mistakenly added Amazon's collected tax to the return would have turned that refund into a needless payment.

Where Amazon GST/HST goes wrong: Registering late and losing ITCs, double-reporting Amazon-collected tax, missing ITCs on FBA fees and ads, ignoring provincial PST and QST, and non-residents assuming they have no Canadian obligations. Every one of these is avoidable with Amazon-specific accounting.

Case Study: FBA Seller Double-Reporting Tax, Ontario

An Ontario FBA seller had been adding the GST/HST Amazon already remitted to their own returns and was paying the CRA far more than they owed, while never claiming the input tax credits on their FBA fees and ad spend. We reconciled the Amazon settlement reports, separated marketplace-collected from self-collected tax, claimed the missed credits across the open periods, and corrected the filings. The seller moved from overpaying every quarter to a properly calculated position, with several periods turning into refunds once the credits were applied.

Double-reporting corrected. Missed ITCs recovered. Refund position restored.

Filing Amazon GST/HST Right Starts With the Settlement Report.

We reconcile your Amazon payouts, separate marketplace-collected tax, claim every credit and file correctly. From $150 per filing. All fees include HST.

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Frequently Asked Questions: Amazon Seller GST/HST in Canada

Do Amazon sellers need to register for GST/HST in Canada?
Most do. Once your taxable sales reach $30,000 over four consecutive calendar quarters you must register. Many sellers also register voluntarily before that to claim input tax credits on startup costs, inventory and Amazon fees.
What is the $30,000 threshold?
It is the small-supplier limit. Until your taxable sales pass $30,000 in a rolling four-quarter period you can stay unregistered, but once you cross it you must register, charge and remit GST/HST.
Does Amazon collect GST/HST for me?
Amazon collects and remits GST/HST on many marketplace sales to Canadian buyers directly to the CRA. That tax has already been handled, which is why it must not be reported again on your own return.
What is double-reporting and why is it a problem?
Double-reporting is including the GST/HST Amazon already remitted on your own return as tax you collected. It causes the same tax to be remitted twice and makes you overpay the CRA. It is the most common Amazon filing error.
How do I separate Amazon-collected tax from my own?
By reconciling the Amazon settlement reports against your sales and identifying which tax Amazon remitted versus which you collected directly. We do this on every return so only your self-collected tax is reported.
Do I still report Amazon sales if Amazon collected the tax?
You report your sales and revenue, but you do not report the GST/HST Amazon already collected and remitted as tax you collected. The income reporting and the tax-collected reporting are handled separately.
Can I claim input tax credits on FBA fees?
Yes. Where GST/HST is charged on FBA fulfilment, referral, storage and advertising fees, those amounts are recoverable as input tax credits once you are registered. Capturing them reduces what you remit or increases your refund.
Can I claim ITCs on my advertising spend?
Yes. GST/HST charged by Canadian-registered advertising platforms is fully recoverable as an input tax credit. At meaningful ad spend, this is a significant recoverable amount every period.
Are my US and international Amazon sales taxable?
Sales to customers outside Canada are generally zero-rated, meaning you charge 0% GST/HST but still claim full input tax credits on your Canadian costs. Sellers with heavy international volume are often in a refund position.
Why am I in a GST/HST refund position?
If much of your tax is handled by Amazon or your sales are zero-rated, you collect little tax yet still pay GST/HST on FBA fees, ads and Canadian costs. The recoverable credits can exceed what you collect, producing a refund.
Should I register for GST/HST before my first sale?
Often yes. Registering early lets you claim input tax credits on pre-launch costs like inventory, software and advertising. If you wait until after $30,000, those earlier credits are generally lost.
What happens if I registered late?
You may have lost some pre-registration credits and could owe tax on sales after you should have registered. We assess the position, get you registered correctly and clean up the filings.
Do I need to worry about PST or QST?
Possibly. British Columbia, Saskatchewan and Manitoba have their own PST rules, and Quebec has QST, each with separate thresholds. Whether you must register depends on your sales and inventory location in each province.
Does where my inventory is stored affect my tax?
Yes. Storing inventory in a province can create tax obligations there, which matters for FBA sellers whose stock is spread across Amazon fulfilment centres. We factor inventory location into your registration analysis.
I am a non-resident selling into Canada. Do these rules apply?
They can. Non-resident Amazon sellers may have Canadian GST/HST obligations depending on revenue, whether inventory is stored in Canada and how Amazon handles the tax. We review non-resident positions specifically.
How do I report Amazon GST/HST on my return?
You report your self-collected GST/HST, claim your input tax credits, and exclude the tax Amazon already remitted. The settlement reconciliation is what makes this accurate.
How often do I file GST/HST?
Your filing frequency, annual, quarterly or monthly, depends on your revenue and elections. We set the frequency that fits your business and keep you on schedule.
What records do I need for Amazon GST/HST?
Your Amazon settlement and tax reports, sales by marketplace, fee statements, advertising invoices, inventory and expense records, and bank deposits. Complete records make accurate, refund-maximizing filings possible.
Do refunds and returns affect my GST/HST?
Yes. Refunds reduce your sales and the associated tax. They must be tracked so your return reflects net figures rather than gross sales, which is part of proper settlement reconciliation.
What if I sell on Amazon and Shopify both?
Multi-channel sellers must separate each channel's tax treatment, because marketplace-collected tax on Amazon is handled differently from tax you collect directly on Shopify. We track each channel correctly on one return.
Can incorrect GST/HST filings trigger a CRA review?
They can. Mismatches, double-reporting and large refund claims without supporting reconciliation draw attention. Clean, well-documented filings are the best protection against questions.
I think I have been filing wrong for a while. Can you fix it?
Yes. We review your past filings, correct double-reporting, recover missed input tax credits where possible, and bring your GST/HST current and accurate.
Do you reconcile the Amazon settlement reports for me?
Yes. We reconcile Amazon settlement reports against your deposits, fees, refunds and reserves so your books and your GST/HST return reflect actual sales and tax.
What accounting software do you use for Amazon sellers?
We typically use QuickBooks Online with trusted connectors to bring Amazon data in accurately, so the GST/HST figures flow from clean, reconciled books.
Do you handle both FBA and FBM sellers?
Yes. We work with both Fulfilled by Amazon and Fulfilled by Merchant sellers, including the inventory, shipping and fee differences that affect GST/HST and profitability.
How much does Amazon GST/HST filing cost?
From $150 per filing, depending on volume and channels. We quote an exact flat fee before starting, and all fees include HST.
Is my corporate tax return included?
Our e-commerce engagements are built around full annual compliance. We confirm exactly what is included for your situation when we quote, with no hidden add-ons.
Are your fees inclusive of HST?
Yes. All quoted fees include HST, so the number you are quoted is the number you pay. There is no hourly billing.
How do I pay your fees?
Payment is by Interac e-Transfer to info@gondaliyacpa.ca. Auto-deposit is enabled, so no security question is needed.
How do I get started?
Book a free consultation or use our fee calculator. We review your Amazon account, reconcile your settlements, sort out registration and provincial obligations, and file your GST/HST correctly. Book Free Consultation →

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